Denmark will ban all civilian drone flights across the country this week to ensure security as Copenhagen hosts a European Union summit gathering heads of government, the transport ministry said on Sunday.

Mysterious drone sightings across Denmark since September 22 have prompted the closure of several airports, with Denmark hinting at possible Russian involvement, charges Moscow has rejected.

Drones were observed over Danish military sites overnight for the second straight day, Denmark's army said on Sunday.

Copenhagen is to host an EU summit on Wednesday and Thursday.

"Denmark will host EU leaders in the coming week, where we will have extra focus on security. Therefore, from Monday to Friday, we will close the Danish airspace to all civilian drone flights," Transport Minister Thomas Danielsen said in a statement.

"In this way, we remove the risk that enemy drones can be confused with legal drones and vice versa," he added.

A violation of the ban can result in a fine or imprisonment for up to two years, the ministry said.

Justice Minister Peter Hummelgaard said in the same statement the purpose of the ban was to simplify the work of police and other authorities.

"The police are on heightened alert, and our authorities must use their forces where necessary to take care of Danes and our guests."

He said the ban would mean police would not have to "spend their efforts on civilian drones" that did not pose a problem to security and police.

Danish police said on Saturday they had received more than 500 reports of drone flights from the public, most of which were dismissed as being not of interest.

The ban does not apply to military drone flights and state-operated drones, including police and emergency drone operations, as well as health-related drone operations, the transport ministry said.

The string of drone sightings in the past week comes on the heels of drone incursions in Polish and Romanian territory and the violation of Estonian airspace by Russian fighter jets, which raised tensions in light of the war in Ukraine.

Danish investigators have so far failed to identify those responsible for the drone flights over Denmark, but Prime Minister Mette Frederiksen said this week that "there is one main country that poses a threat to Europe's security, and it is Russia."

Moscow said on Thursday it "firmly rejects" any suggestion that it was involved in the Danish incidents. (AFP)